From b8e4496063f80c8c4b903911e4b4f11d548ab41f Mon Sep 17 00:00:00 2001 From: Kenny Daniel Date: Wed, 22 May 2024 23:45:02 -0700 Subject: [PATCH] Upgrade dataPage to match dictionary type --- src/column.js | 28 +- src/convert.js | 22 + src/datapage.js | 4 +- test/convert.test.js | 11 +- test/files/addrtype-missing-value.json | 12 - .../addrtype-missing-value.metadata.json | 50 - test/files/addrtype-missing-value.parquet | Bin 243 -> 0 bytes .../plain-dict-uncompressed-checksum.json | 1002 +++++++++++++++++ ...n-dict-uncompressed-checksum.metadata.json | 125 ++ .../plain-dict-uncompressed-checksum.parquet | Bin 0 -> 816 bytes test/schemaTree.test.js | 33 +- 11 files changed, 1164 insertions(+), 123 deletions(-) delete mode 100644 test/files/addrtype-missing-value.json delete mode 100644 test/files/addrtype-missing-value.metadata.json delete mode 100644 test/files/addrtype-missing-value.parquet create mode 100644 test/files/plain-dict-uncompressed-checksum.json create mode 100644 test/files/plain-dict-uncompressed-checksum.metadata.json create mode 100644 test/files/plain-dict-uncompressed-checksum.parquet diff --git a/src/column.js b/src/column.js index 03b5796..4b1dbcb 100644 --- a/src/column.js +++ b/src/column.js @@ -1,5 +1,5 @@ import { assembleLists } from './assemble.js' -import { convert } from './convert.js' +import { convert, dereferenceDictionary } from './convert.js' import { readDataPage, readDictionaryPage } from './datapage.js' import { readDataPageV2 } from './datapageV2.js' import { parquetHeader } from './header.js' @@ -11,6 +11,7 @@ import { concat } from './utils.js' * Parse column data from a buffer. * * @typedef {import('./types.js').ColumnMetaData} ColumnMetaData + * @typedef {import('./types.js').DecodedArray} DecodedArray * @param {import('./types.js').DataReader} reader * @param {import('./types.js').RowGroup} rowGroup row group metadata * @param {ColumnMetaData} columnMetadata column metadata @@ -20,7 +21,7 @@ import { concat } from './utils.js' */ export function readColumn(reader, rowGroup, columnMetadata, schemaPath, { compressors, utf8 }) { const { element } = schemaPath[schemaPath.length - 1] - /** @type {ArrayLike | undefined} */ + /** @type {DecodedArray | undefined} */ let dictionary = undefined let seen = 0 /** @type {any[]} */ @@ -49,8 +50,8 @@ export function readColumn(reader, rowGroup, columnMetadata, schemaPath, { compr // assert(!daph.statistics || daph.statistics.null_count === BigInt(daph.num_values - dataPage.length)) // construct output values: skip nulls and construct lists - dereferenceDictionary(dictionary, dataPage) - values = convert(dataPage, element, utf8) + values = dereferenceDictionary(dictionary, dataPage) + values = convert(values, element, utf8) if (repetitionLevels.length || definitionLevels?.length) { // Use repetition levels to construct lists const maxDefinitionLevel = getMaxDefinitionLevel(schemaPath) @@ -78,8 +79,8 @@ export function readColumn(reader, rowGroup, columnMetadata, schemaPath, { compr ) seen += daph2.num_values - dereferenceDictionary(dictionary, dataPage) - values = convert(dataPage, element, utf8) + values = dereferenceDictionary(dictionary, dataPage) + values = convert(values, element, utf8) if (repetitionLevels.length || definitionLevels?.length) { // Use repetition levels to construct lists const maxDefinitionLevel = getMaxDefinitionLevel(schemaPath) @@ -109,21 +110,6 @@ export function readColumn(reader, rowGroup, columnMetadata, schemaPath, { compr return rowData } -/** - * Map data to dictionary values in place. - * - * @typedef {import('./types.js').DecodedArray} DecodedArray - * @param {ArrayLike | undefined} dictionary - * @param {DecodedArray} dataPage - */ -function dereferenceDictionary(dictionary, dataPage) { - if (dictionary) { - for (let i = 0; i < dataPage.length; i++) { - dataPage[i] = dictionary[dataPage[i]] - } - } -} - /** * Find the start byte offset for a column chunk. * diff --git a/src/convert.js b/src/convert.js index a911e25..579503d 100644 --- a/src/convert.js +++ b/src/convert.js @@ -97,3 +97,25 @@ export function parseFloat16(bytes) { if (exp === 0x1f) return frac ? NaN : sign * Infinity return sign * Math.pow(2, exp - 15) * (1 + frac / 1024) } + +/** + * Map data to dictionary values in place. + * + * @param {DecodedArray | undefined} dictionary + * @param {DecodedArray} dataPage + * @returns {DecodedArray} + */ +export function dereferenceDictionary(dictionary, dataPage) { + let output = dataPage + if (dictionary) { + if (dataPage instanceof Uint8Array && !(dictionary instanceof Uint8Array)) { + // upgrade dataPage to match dictionary type + // @ts-expect-error not my fault typescript doesn't understand constructors + output = new dictionary.constructor(dataPage.length) + } + for (let i = 0; i < dataPage.length; i++) { + output[i] = dictionary[dataPage[i]] + } + } + return output +} diff --git a/src/datapage.js b/src/datapage.js index 03cf1af..b234efd 100644 --- a/src/datapage.js +++ b/src/datapage.js @@ -54,13 +54,11 @@ export function readDataPage(bytes, daph, schemaPath, { type }) { } /** - * Read a page containing dictionary data. - * * @param {Uint8Array} bytes raw page data * @param {import("./types.d.ts").DictionaryPageHeader} diph dictionary page header * @param {ColumnMetaData} columnMetadata * @param {number | undefined} typeLength - type_length from schema - * @returns {ArrayLike} array of values + * @returns {DecodedArray} */ export function readDictionaryPage(bytes, diph, columnMetadata, typeLength) { const view = new DataView(bytes.buffer, bytes.byteOffset, bytes.byteLength) diff --git a/test/convert.test.js b/test/convert.test.js index 1d596ac..ee034e4 100644 --- a/test/convert.test.js +++ b/test/convert.test.js @@ -111,7 +111,8 @@ describe('convert function', () => { }) describe('parseFloat16', () => { - it('should convert numbers', () => { + it('convert float16 numbers', () => { + expect(parseFloat16(undefined)).toBe(undefined) expect(parseFloat16(new Uint8Array([0x00, 0xbc]))).toBe(-1) expect(parseFloat16(new Uint8Array([0x00, 0x00]))).toBe(0) expect(parseFloat16(new Uint8Array([0x00, 0x38]))).toBe(0.5) @@ -119,22 +120,22 @@ describe('parseFloat16', () => { expect(parseFloat16(new Uint8Array([0x00, 0x40]))).toBe(2) }) - it('should convert -0', () => { + it('convert float16 -0', () => { expect(parseFloat16(new Uint8Array([0x00, 0x80]))).toBe(-0) expect(parseFloat16(new Uint8Array([0x00, 0x80]))).not.toBe(0) }) - it('should convert Infinity', () => { + it('convert float16 Infinity', () => { expect(parseFloat16(new Uint8Array([0x00, 0x7c]))).toBe(Infinity) expect(parseFloat16(new Uint8Array([0x00, 0xfc]))).toBe(-Infinity) }) - it('should convert NaN', () => { + it('convert float16 NaN', () => { expect(parseFloat16(new Uint8Array([0x00, 0x7e]))).toBeNaN() expect(parseFloat16(new Uint8Array([0x01, 0x7e]))).toBeNaN() }) - it('should convert a subnormal number', () => { + it('convert float16 subnormal number', () => { expect(parseFloat16(new Uint8Array([0xff, 0x03]))) .toBeCloseTo(Math.pow(2, -14) * (1023 / 1024), 5) }) diff --git a/test/files/addrtype-missing-value.json b/test/files/addrtype-missing-value.json deleted file mode 100644 index f7a432c..0000000 --- a/test/files/addrtype-missing-value.json +++ /dev/null @@ -1,12 +0,0 @@ -[ - [ "Block" ], - [ "Intersection" ], - [ "Block" ], - [ "Block" ], - [ null ], - [ "Block" ], - [ "Intersection" ], - [ "Block" ], - [ "Block" ], - [ "Intersection" ] -] diff --git a/test/files/addrtype-missing-value.metadata.json b/test/files/addrtype-missing-value.metadata.json deleted file mode 100644 index 5c72310..0000000 --- a/test/files/addrtype-missing-value.metadata.json +++ /dev/null @@ -1,50 +0,0 @@ -{ - "version": 1, - "created_by": "DuckDB", - "metadata_length": 149, - "schema": [ - { - "repetition_type": "REQUIRED", - "name": "duckdb_schema", - "num_children": 1 - }, - { - "type": "BYTE_ARRAY", - "repetition_type": "OPTIONAL", - "name": "ADDRTYPE", - "converted_type": "UTF8" - } - ], - "num_rows": 10, - "row_groups": [ - { - "columns": [ - { - "file_offset": 0, - "meta_data": { - "type": "BYTE_ARRAY", - "encodings": ["PLAIN", "RLE_DICTIONARY"], - "path_in_schema": ["ADDRTYPE"], - "codec": "SNAPPY", - "num_values": 10, - "total_uncompressed_size": 78, - "total_compressed_size": 82, - "data_page_offset": 31, - "dictionary_page_offset": 4, - "statistics": { - "max": "Intersection", - "min": "Block", - "max_value": "Intersection", - "min_value": "Block", - "null_count": 1, - "distinct_count": 2 - } - } - } - ], - "file_offset": 4, - "total_byte_size": 33024, - "num_rows": 10 - } - ] -} diff --git a/test/files/addrtype-missing-value.parquet b/test/files/addrtype-missing-value.parquet deleted file mode 100644 index 55e92bef4e8eeb6076d392a747d22f4e84db976e..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 243 zcmZvXy9&Zk5JcxLF$9T_B74n+v+BcyIV}$IQ2%hT~qz5(KzE|mZP diff --git a/test/files/plain-dict-uncompressed-checksum.json b/test/files/plain-dict-uncompressed-checksum.json new file mode 100644 index 0000000..2fc8b50 --- /dev/null +++ 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"schema": [ + { + "name": "m", + "num_children": 2 + }, + { + "type": "INT64", + "repetition_type": "REQUIRED", + "name": "long_field" + }, + { + "type": "BYTE_ARRAY", + "repetition_type": "REQUIRED", + "name": "binary_field" + } + ], + "num_rows": 1000, + "row_groups": [ + { + "columns": [ + { + "file_offset": 31, + "meta_data": { + "type": "INT64", + "encodings": [ + "PLAIN_DICTIONARY", + "BIT_PACKED" + ], + "path_in_schema": [ + "long_field" + ], + "codec": "UNCOMPRESSED", + "num_values": 1000, + "total_uncompressed_size": 54, + "total_compressed_size": 54, + "data_page_offset": 31, + "dictionary_page_offset": 4, + "statistics": { + "max": 0, + "min": 0, + "null_count": 0, + "max_value": 0, + "min_value": 0 + }, + "encoding_stats": [ + { + "page_type": 2, + "encoding": "PLAIN_DICTIONARY", + "count": 1 + }, + { + "page_type": 0, + "encoding": "PLAIN_DICTIONARY", + "count": 1 + } + ] + }, + "offset_index_offset": 262, + "offset_index_length": 10, + "column_index_offset": 144, + "column_index_length": 31, + "crypto_metadata": 31 + }, + { + "file_offset": 117, + "meta_data": { + "type": "BYTE_ARRAY", + "encodings": [ + "PLAIN_DICTIONARY", + "BIT_PACKED" + ], + "path_in_schema": [ + "binary_field" + ], + "codec": "UNCOMPRESSED", + "num_values": 1000, + "total_uncompressed_size": 86, + "total_compressed_size": 86, + "data_page_offset": 117, + "dictionary_page_offset": 58, + "statistics": { + "max": "a655fd0e-9949-4059-bcae-fd6a002a4652", + "min": "a655fd0e-9949-4059-bcae-fd6a002a4652", + "null_count": 0, + "max_value": "a655fd0e-9949-4059-bcae-fd6a002a4652", + "min_value": "a655fd0e-9949-4059-bcae-fd6a002a4652" + }, + "encoding_stats": [ + { + "page_type": 2, + "encoding": "PLAIN_DICTIONARY", + "count": 1 + }, + { + "page_type": 0, + "encoding": "PLAIN_DICTIONARY", + "count": 1 + } + ] + }, + "offset_index_offset": 272, + "offset_index_length": 11, + "column_index_offset": 175, + "column_index_length": 87, + "crypto_metadata": 87 + } + ], + "total_byte_size": 140, + "num_rows": 1000, + "file_offset": 4, + "total_compressed_size": 140, + "ordinal": 0 + } + ], + "key_value_metadata": [ + { + "key": "writer.model.name", + "value": "example" + } + ], + "created_by": "parquet-mr version 1.13.0-SNAPSHOT (build 261f7d2679407c833545b56f4c85a4ae8b5c9ed4)", + "metadata_length": 525 +} diff --git a/test/files/plain-dict-uncompressed-checksum.parquet b/test/files/plain-dict-uncompressed-checksum.parquet new file mode 100644 index 0000000000000000000000000000000000000000..f49f1c425f922c69243aaefd7bb4f6f9c2f49915 GIT binary patch literal 816 zcma)5&1%~~5FUx86~!eDWEL&#!G}boU>Vug$`%AeZaKB0?!Bz6RS`&bsyh97hu#XM z$2>sjy-(0%L+cVEi}^V?PX3?59(0{5*?v5cG8z zss4Yeid|c{%Lc1+%S2mnfEB#oq=#@Dg>A}8KE{aZgOL2%TAKtNomdsof$RX>d*yug z{8?U@G6QUpqm>pjUBBJ9_~nj}qT`JvGI78haXSHlU|#al8+(r2?zgo#9Nuib^@8XS z;|y&e%9aZFJBEAw+{Q6@*OtWAy4PQ`th-%U{KBFbZy}pe(JYDvZA5IdYX4a9oFV7m zZTw^b|7a6$o$+H&x?9aNQ+8*%GVWdTMpvh$0e5n$>lbHc;a7G0m8oAA z^I5ys?G3ttKY4VVOims@Z6Bs*MVYnxQ7<26{b(46!Eibn3{ { - it('parse schema tree from addrtype-missing-value.parquet', async () => { - const arrayBuffer = await readFileToArrayBuffer('test/files/addrtype-missing-value.parquet') - const metadata = parquetMetadata(arrayBuffer) - const result = parquetSchema(metadata) - expect(result).toEqual(addrtypeSchema) - }) - +describe('parquetSchema', () => { it('parse schema tree from rowgroups.parquet', async () => { const arrayBuffer = await readFileToArrayBuffer('test/files/rowgroups.parquet') const metadata = parquetMetadata(arrayBuffer) @@ -18,30 +11,6 @@ describe('schemaTree', () => { }) }) -// Parquet v1 from DuckDB -const addrtypeSchema = { - children: [ - { - children: [], - count: 1, - element: { - converted_type: 'UTF8', - name: 'ADDRTYPE', - repetition_type: 'OPTIONAL', - type: 'BYTE_ARRAY', - }, - path: ['ADDRTYPE'], - }, - ], - count: 2, - element: { - name: 'duckdb_schema', - num_children: 1, - repetition_type: 'REQUIRED', - }, - path: [], -} - // Parquet v2 from pandas with 2 row groups const rowgroupsSchema = { children: [